The major problem with Yoshi's Story... well is that any of the levels don't actually draw there background properly in any way meaning you only see Yoshi itself while everything else is just pure black.
Also to add to that the Nintendo intro doesn't seem to draw and the "lucky" fruit selection and Yoshi colour selection also doesn't seem to be drawing but I've got a feeling there both related to the background drawing problem
I've Included two screenshot's, one with the missing background taken with TR64 OpenGL v0.9.3 01/31/2012 and one with the backgrounds as expected taken with the plugin "Jabo's Direct3D8 1.6"